Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF49_2020Xyloseresponsive transcription regulator ROK family. (410 aa)    
Predicted Functional Partners:
tal
Transaldolase EC 2212 Glucose6phosphate isomerase EC 5319; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
  
 
 0.790
BF49_4887
4alphaglucanotransferase amylomaltase EC 24125.
   
 0.555
zwf
Glucose6phosphate 1dehydrogenase EC 11149; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
 
 0.542
BF49_2019
Xylose ABC transporter periplasmic xylosebinding protein XylF.
 
  
 0.541
BF49_1139
Gluconate utilization system GntI transcriptional repressor.
    
 0.530
BF49_5306
TPR repeat.
    
 0.511
BF49_3501
Phosphoglucosamine mutase EC 54210 Phosphomannomutase EC 5428.
  
 
 0.510
BF49_1935
Glycogen debranching enzyme.
    
 0.478
BF49_2810
4hydroxytetrahydrodipicolinate synthase EC 4337; Belongs to the DapA family.
  
 
 0.478
BF49_6568
4hydroxytetrahydrodipicolinate synthase EC 4337; Belongs to the DapA family.
  
 
 0.478
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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