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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF49_2078RNA binding methyltransferase FtsJ like. (244 aa)    
Predicted Functional Partners:
dxs
1deoxyDxylulose 5phosphate synthase EC 2217; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
  
  
 0.887
BF49_2079
23S rRNA Uracil5 methyltransferase RumA EC 211; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.853
BF49_2077
Nucleoside 2deoxyribosyltransferase.
       0.795
nadK
NAD kinase EC 27123; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
  
  
 0.715
BF49_2080
FIG00443075 hypothetical protein.
     
 0.594
ffh
Signal recognition particle subunit Ffh SRP54 TC 3A511; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the [...]
  
    0.579
hisS
HistidyltRNA synthetase EC 61121.
  
  
 0.534
ftsA
Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
   
  
 0.527
BF49_6654
Metallobetalactamase family protein RNAspecific.
 
   
 0.498
BF49_7240
Octaprenyl diphosphate synthase EC 25190 Dimethylallyltransferase EC 2511 2E6Efarnesyl diphosphate synthase EC 25110 Geranylgeranyl diphosphate synthase EC 25129; Belongs to the FPP/GGPP synthase family.
 
    0.469
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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