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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2080FIG00443075 hypothetical protein. (366 aa)    
Predicted Functional Partners:
BF49_2078
RNA binding methyltransferase FtsJ like.
     
 0.594
BF49_2079
23S rRNA Uracil5 methyltransferase RumA EC 211; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.574
BF49_5083
ABCtype multidrug transport system permease component.
  
  
 0.570
BF49_5399
ABC transporter permease protein.
  
  
 0.570
BF49_5999
Nitrate ABC transporter permease protein.
  
  
 0.570
BF49_7279
Blr0907 hypothetical protein.
  
  
 0.570
BF49_6483
Abortive infection protein.
  
  
 0.562
BF49_2666
Putative signal peptide protein.
  
     0.512
BF49_2077
Nucleoside 2deoxyribosyltransferase.
       0.511
BF49_5272
Cytochrome c oxidase polypeptide III EC 1931.
  
 
  0.504
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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