Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF49_2096RNA polymerase sigma54 factor RpoN; Belongs to the sigma-70 factor family. ECF subfamily. (152 aa)    
Predicted Functional Partners:
BF49_2097
Transmembrane regulator protein PrtR.
 
 
 0.893
BF49_1650
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.780
BF49_3381
RNA polymerase sigma70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.769
BF49_7157
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.769
BF49_4744
Probable RNA polymerase sigma subunit; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.768
BF49_1039
RNA polymerase ECFtype sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.762
BF49_3379
RNA polymerase sigma70 factor ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.758
rpoZ
DNAdirected RNA polymerase omega subunit EC 2776; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 0.751
rpoB
DNAdirected RNA polymerase beta subunit EC 2776; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.740
rpoC
DNAdirected RNA polymerase beta subunit EC 2776; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.729
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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