Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2106Extensinlike protein. (377 aa)    
Predicted Functional Partners:
BF49_2108
3methylmercaptopropionylCoA ligase DmdB.
       0.714
BF49_1623
Basic prolinerich protein precursor.
  
     0.604
BF49_0393
FIG00450577 hypothetical protein.
  
     0.549
BF49_3003
Ribonuclease; Belongs to the RNase T2 family.
  
     0.543
BF49_3267
Cell division protein FtsX.
  
     0.530
BF49_1512
Hypothetical protein.
  
     0.476
BF49_0275
FIG006581 hypothetical protein.
  
     0.466
BF49_7292
Chemotaxis protein methyltransferase CheR EC 21180.
  
     0.462
BF49_3183
COGs COG3683.
  
     0.456
BF49_6502
Soluble lytic murein transglycosylase precursor EC 321.
  
     0.446
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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