Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2109FIG00443898 hypothetical protein. (271 aa)    
Predicted Functional Partners:
BF49_1587
Mll7655 protein.
  
     0.653
BF49_0618
FIG00450081 hypothetical protein.
  
     0.639
BF49_2225
FIG00450267 hypothetical protein.
  
     0.639
BF49_4274
Probable periplasmic protein Cj0610c imported Campylobacter jejuni strain NCTC 11168.
  
     0.595
BF49_2108
3methylmercaptopropionylCoA ligase DmdB.
       0.587
BF49_1264
FIG00442049 hypothetical protein.
  
     0.552
BF49_2099
FIG00440914 hypothetical protein.
 
     0.538
BF49_0378
FIG00441882 hypothetical protein.
  
     0.537
BF49_6908
Invasion protein B involved in pathogenesis.
  
     0.537
BF49_2731
Flagellar protein FliJ.
  
     0.530
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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