Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2132Hypothetical protein. (194 aa)    
Predicted Functional Partners:
BF49_2134
Hypothetical protein.
       0.815
BF49_2133
Bll5201 hypothetical protein.
       0.814
BF49_2481
Eight transmembrane protein EpsH.
    
 0.812
rplF
LSU ribosomal protein L6p L9e; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.692
BF49_6970
Polyketide synthase associated protein PapA1.
  
 
  0.668
BF49_0472
Hypothetical protein.
  
   
 0.648
BF49_4189
Hypothetical protein.
    
 0.647
BF49_4813
Flagellar hooklength control protein FliK.
  
   
 0.640
BF49_0647
Bll0131 probable acidCoA ligase.
  
 
  0.622
BF49_0128
TesBlike acylCoA thioesterase 4.
  
     0.611
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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