Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2155Universal stress protein UspA and related nucleotidebinding proteins. (264 aa)    
Predicted Functional Partners:
BF49_3231
MethylatedDNAproteincysteine methyltransferase EC 21163.
  
  
 0.535
BF49_7271
MethylatedDNAproteincysteine methyltransferase EC 21163.
  
  
 0.535
BF49_1920
Type cbb3 cytochrome oxidase biogenesis protein CcoH.
 
    0.499
BF49_3351
Outer membrane protein W precursor.
 
  
 0.486
BF49_2154
Serine protease precursor MucDAlgY associated with sigma factor RpoE; Belongs to the peptidase S1C family.
  
    0.476
BF49_0274
UroporphyrinogenIII synthase EC 42175; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
    0.470
BF49_2142
Twocomponent hybrid sensor and regulator.
  
  
 0.456
BF49_5564
FIG00440890 hypothetical protein.
 
  
 0.451
hpf
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
  
 0.449
BF49_0154
ADA regulatory protein MethylatedDNAproteincysteine methyltransferase EC 21163.
  
  
 0.437
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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