STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2173NicelCobaltspecific TonBdependent outer membrane receptor. (473 aa)    
Predicted Functional Partners:
BF49_1146
Ferric siderophore transport system periplasmic binding protein TonB.
 
 0.822
BF49_4381
TolA protein.
  
 0.790
BF49_6400
TolA protein.
  
 0.790
BF49_0805
Hypothetical protein.
  
 0.694
BF49_0834
Prolinealaninerich repetetive membrane anchored protein.
  
 0.694
BF49_1147
Biopolymer transport protein ExbDTolR.
  
 
 0.589
BF49_4380
Tol biopolymer transport system TolR protein.
  
 
 0.589
BF49_5269
Hypothetical protein.
  
     0.586
BF49_2174
NicelCobaltspecific TonBdependent outer membrane receptor.
 
    
0.573
BF49_6684
Possible signal peptide protein.
 
     0.569
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.