Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2217D2hydroxyglutarate dehydrogenase. (475 aa)    
Predicted Functional Partners:
BF49_2218
GCN5related Nacetyltransferase.
       0.800
BF49_2219
Nudix hydrolase family protein YffH.
       0.788
BF49_2216
TsaC protein YrdCSua5 domains required for threonylcarbamoyladenosine t6A37 modification in tRNA; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.743
BF49_3285
Electron transfer flavoprotein alpha subunit.
 
 
 0.729
BF49_3286
Electron transfer flavoprotein beta subunit.
 
 
 0.698
BF49_2624
Tungstencontaining formate dehydrogenase beta subunit.
   
 0.654
BF49_3074
Glycolate dehydrogenase EC 119914 FADbinding subunit GlcE.
 
  
 
0.623
BF49_3073
Glycolate dehydrogenase EC 119914 ironsulfur subunit GlcF.
 
 
 0.620
BF49_6732
Glycolate oxidase EC 11315.
 
 0.510
BF49_2933
Llactate dehydrogenase EC 1123.
 
 0.488
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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