Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2223FIG00442433 hypothetical protein. (156 aa)    
Predicted Functional Partners:
BF49_2224
GDPmannose mannosyl hydrolase EC 361; Belongs to the Nudix hydrolase family.
       0.818
BF49_3063
FIG00441725 hypothetical protein.
  
     0.761
BF49_6123
Hpt domain.
  
     0.727
BF49_0042
FIG00886901 hypothetical protein.
  
     0.725
BF49_0047
FIG00886901 hypothetical protein.
  
     0.725
BF49_7364
FIG00886901 hypothetical protein.
  
     0.725
BF49_1652
FIG00439688 hypothetical protein.
  
     0.719
BF49_2222
Gifsy2 prophage protein; Belongs to the SOS response-associated peptidase family.
       0.698
BF49_5139
FIG00886901 hypothetical protein.
  
     0.697
BF49_6122
FIG00439572 hypothetical protein.
  
     0.669
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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