Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2235Protein tyrosine phosphatases. (168 aa)    
Predicted Functional Partners:
BF49_0113
FIG00442128 hypothetical protein.
  
     0.768
BF49_3980
FIG00450046 hypothetical protein.
  
     0.760
BF49_6439
ATPGTPbinding site motif A.
  
     0.728
BF49_6539
FIG00441513 hypothetical protein.
  
     0.725
BF49_6515
Signal peptidase I EC 342189.
  
     0.718
BF49_6061
FIG00450516 Zincfinger domain protein.
  
     0.709
BF49_0618
FIG00450081 hypothetical protein.
  
     0.701
BF49_2225
FIG00450267 hypothetical protein.
 
     0.696
BF49_6099
FIG00440034 hypothetical protein.
  
     0.695
BF49_1546
Twocomponent sensor histidine kinase PleC.
  
     0.693
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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