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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2260Octaprenyl diphosphate synthase EC 25190 Dimethylallyltransferase EC 2511 2E6Efarnesyl diphosphate synthase EC 25110 Geranylgeranyl pyrophosphate synthetase EC 25129; Belongs to the FPP/GGPP synthase family. (335 aa)    
Predicted Functional Partners:
BF49_6705
Undecaprenyl diphosphate synthase EC 25131; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.974
BF49_7303
Undecaprenyl diphosphate synthase EC 25131; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.967
BF49_7240
Octaprenyl diphosphate synthase EC 25190 Dimethylallyltransferase EC 2511 2E6Efarnesyl diphosphate synthase EC 25110 Geranylgeranyl diphosphate synthase EC 25129; Belongs to the FPP/GGPP synthase family.
 
  
0.957
ubiA
4hydroxybenzoate polyprenyltransferase EC 25139; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
 
 
 0.952
BF49_6804
Phytoene synthase EC 25132.
  
 0.949
BF49_6654
Metallobetalactamase family protein RNAspecific.
  
    0.792
BF49_1690
Phytoene synthase EC 25132.
  
 0.783
BF49_1691
Phytoene synthase EC 25132.
  
 0.758
xseB
Exodeoxyribonuclease VII small subunit EC 31116; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
 
  
 0.739
BF49_2267
Electron transfer flavoproteinubiquinone oxidoreductase EC 1551; Accepts electrons from ETF and reduces ubiquinone.
  
 0.725
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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