Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2266FIG140336 TPR domain protein. (600 aa)    
Predicted Functional Partners:
BF49_1165
Adenylate cyclase EC 4611.
   
 
 0.723
BF49_3165
Adenylate cyclase EC 4611.
   
 
 0.723
BF49_2916
Adenylate cyclase EC 4611.
   
 
 0.716
BF49_4047
Adenylate cyclase EC 4611.
   
 
 0.716
ispE
4diphosphocytidyl2CmethylDerythritol kinase EC 271148; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
       0.708
BF49_2267
Electron transfer flavoproteinubiquinone oxidoreductase EC 1551; Accepts electrons from ETF and reduces ubiquinone.
 
     0.656
BF49_0425
Periplasmic septal ring factor with murein hydrolase activity EnvCYibP.
 
 
   0.647
BF49_3272
Methylaccepting chemotaxis protein.
  
     0.584
BF49_0558
SAMdependent methyltransferase 2 in cluster with Hydroxyacylglutathione hydrolase EC 3126.
 
     0.577
BF49_1617
FIG00442207 hypothetical protein.
  
     0.572
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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