Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_2268UracilDNA glycosylase family 4. (269 aa)    
Predicted Functional Partners:
BF49_6507
UracilDNA glycosylase family 5.
  
  
 0.954
BF49_1673
Domain often clustered or fused with uracilDNA glycosylase UracilDNA glycosylase putative family 6.
  
  
0.923
BF49_2267
Electron transfer flavoproteinubiquinone oxidoreductase EC 1551; Accepts electrons from ETF and reduces ubiquinone.
       0.694
BF49_6829
Singlestranded DNAbinding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
 
 0.686
BF49_0425
Periplasmic septal ring factor with murein hydrolase activity EnvCYibP.
   
   0.630
gpmA
Phosphoglycerate mutase EC 5421; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
  
    0.608
BF49_0027
TsaB protein required for threonylcarbamoyladenosine t6A formation in tRNA.
  
    0.571
BF49_7352
TsaB protein required for threonylcarbamoyladenosine t6A formation in tRNA.
  
    0.571
BF49_6779
Exodeoxyribonuclease III EC 31112.
 
  
 0.550
BF49_0672
SinglestrandedDNAspecific exonuclease RecJ EC 31.
 
   
 0.491
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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