Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2299FIG00887518 hypothetical protein. (251 aa)    
Predicted Functional Partners:
BF49_0378
FIG00441882 hypothetical protein.
  
     0.760
BF49_6117
Bll5524 protein.
  
     0.760
BF49_5005
FIG00442082 hypothetical protein.
  
     0.746
BF49_6312
FIG00446684 hypothetical protein.
  
     0.741
BF49_2300
Bll2491 protein.
       0.736
BF49_3256
FIG01004502 hypothetical protein.
  
     0.722
BF49_6068
FIG00442381 hypothetical protein.
  
     0.700
BF49_2269
Mll1762 protein.
  
     0.698
BF49_0994
FIG00440764 hypothetical protein.
  
     0.694
BF49_5187
Bll6480 protein.
  
     0.672
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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