Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2300Bll2491 protein. (222 aa)    
Predicted Functional Partners:
BF49_6587
Probable glycosyl transferase.
  
  
 0.743
BF49_2299
FIG00887518 hypothetical protein.
       0.736
BF49_6118
Putative ironsulfur cluster assembly scaffold protein for SUF system SufE2.
  
 
 0.591
BF49_5935
Uncharacterized monothiol glutaredoxin ycf64like; Belongs to the glutaredoxin family. Monothiol subfamily.
   
 
 0.565
BF49_2301
Hypothetical protein.
       0.553
BF49_2624
Tungstencontaining formate dehydrogenase beta subunit.
     
 0.513
BF49_1812
NADPHcytochrome P450 reductase.
    
 0.476
BF49_6923
Assimilatory nitrate reductase large subunit EC17994.
    
 0.471
htpX
Heat shock protein HtpX EC 3424; Belongs to the peptidase M48B family.
       0.448
BF49_0721
Cysteine desulfurase EC 2817.
  
 
 0.446
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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