Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2330FIG017823 ATPase MoxR family. (332 aa)    
Predicted Functional Partners:
BF49_2331
FIG139612 Possible conserved membrane protein.
  
 0.984
BF49_2333
FIG003492 Threonine dehydrogenase and related Zndependent dehydrogenases.
 
     0.947
BF49_2332
FIG003603 membrane protein putative.
 
     0.938
BF49_1468
Nitric oxide reductase activation protein NorD.
  
 
 0.749
BF49_1505
Ornithine decarboxylase EC 41117.
   
 
 0.681
BF49_3562
COG1982 Argininelysineornithine decarboxylases.
   
 
 0.681
BF49_2326
Bsr2468 hypothetical protein.
       0.660
BF49_2325
tRNA nucleotidyltransferase EC 27721 EC 27725; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
    0.637
BF49_2334
Epoxide hydrolase.
       0.628
BF49_2327
Hypothetical nudix hydrolase YeaB.
       0.582
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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