Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2336Conserved protein of unknown function putative outer membrane protein. (795 aa)    
Predicted Functional Partners:
BF49_1146
Ferric siderophore transport system periplasmic binding protein TonB.
 
 0.808
BF49_1420
Outer membrane vitamin B12 receptor BtuB.
 
  
 0.764
BF49_3911
Possible outer membrane protein.
  
  
 0.674
BF49_0805
Hypothetical protein.
  
 0.666
BF49_0834
Prolinealaninerich repetetive membrane anchored protein.
  
 0.666
BF49_4381
TolA protein.
  
 0.666
BF49_6400
TolA protein.
  
 0.666
BF49_2335
Bll2461 protein.
       0.606
BF49_1150
Ferrichromeiron receptor.
 
  
 0.599
BF49_2174
NicelCobaltspecific TonBdependent outer membrane receptor.
  
   
 0.569
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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