Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2343FIG01006956 hypothetical protein. (184 aa)    
Predicted Functional Partners:
BF49_0591
Hypothetical protein.
  
     0.716
BF49_1620
FIG00440661 hypothetical protein.
  
     0.715
BF49_2929
Outer surface protein.
  
     0.698
BF49_6515
Signal peptidase I EC 342189.
  
     0.696
BF49_4027
FIG00450254 hypothetical protein.
  
     0.673
BF49_3051
FIG00444079 hypothetical protein.
  
     0.631
BF49_6539
FIG00441513 hypothetical protein.
  
     0.624
BF49_6122
FIG00439572 hypothetical protein.
  
     0.621
BF49_4211
Flp pilus assembly protein CpaD.
  
     0.603
BF49_0618
FIG00450081 hypothetical protein.
  
     0.598
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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