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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2345Isocitrate lyase EC 4131. (543 aa)    
Predicted Functional Partners:
glcB
Malate synthase G EC 2339; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
 
 
 0.999
BF49_0391
Aconitate hydratase EC 4213; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 
 0.993
BF49_5632
Serineglyoxylate aminotransferase EC 26145.
    
 0.936
BF49_3073
Glycolate dehydrogenase EC 119914 ironsulfur subunit GlcF.
     
 0.919
BF49_1515
Glyoxylate carboligase EC 41147; Belongs to the TPP enzyme family.
     
 0.918
BF49_4361
D3phosphoglycerate dehydrogenase EC 11195.
   
 
 0.914
BF49_4940
D3phosphoglycerate dehydrogenase EC 11195.
   
 
 0.914
BF49_0473
Serineglyoxylate aminotransferase EC 26145.
    
 0.913
BF49_0069
Glyoxylate reductase EC 11179 Glyoxylate reductase EC 11126 Hydroxypyruvate reductase EC 11181; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.910
BF49_1132
2dehydro3deoxyphosphogluconate aldolase EC 41214 4Hydroxy2oxoglutarate aldolase EC 41316.
     
 0.910
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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