Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2346Transcriptional regulator XRE family. (481 aa)    
Predicted Functional Partners:
BF49_2345
Isocitrate lyase EC 4131.
 
   
 0.798
glcB
Malate synthase G EC 2339; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
 
   
 0.712
BF49_2830
Biotin carboxylase EC 63414.
 
   
 0.550
BF49_3960
TesBlike acylCoA thioesterase 2.
  
     0.539
BF49_2344
FIG01005674 hypothetical protein.
       0.513
BF49_6970
Polyketide synthase associated protein PapA1.
 
    0.477
BF49_6968
Hypothetical protein.
  
     0.465
glgC
Glucose1phosphate adenylyltransferase EC 27727; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
 
  
  0.462
BF49_6969
Hypothetical protein.
  
     0.459
BF49_6967
Polyketide synthase.
  
     0.453
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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