Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2366VapB protein antitoxin to VapC; Antitoxin component of a type II toxin-antitoxin (TA) system. (82 aa)    
Predicted Functional Partners:
vapC-2
VapC toxin protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
   
 0.963
BF49_6398
Transcriptional regulator XRE family.
 
  
 0.702
BF49_0587
Programmed cell death antitoxin MazE like.
 
  
 0.689
BF49_2749
Hypothetical protein.
    
 0.640
BF49_3452
Helixturnhelix motif.
  
  
 0.637
BF49_6107
Helixturnhelix motif.
  
  
 0.637
BF49_3451
Putative membrane protein.
  
  
 0.632
BF49_5105
Protein of unknown function UPF0150.
    
 0.629
BF49_6106
Putative membrane protein.
     
 0.584
BF49_0599
Hypothetical protein.
    
 0.549
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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