Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2380Protein of unknown function DUF820. (356 aa)    
Predicted Functional Partners:
BF49_5646
Hypothetical protein.
  
     0.762
BF49_0994
FIG00440764 hypothetical protein.
  
     0.753
BF49_6892
FIG01265301 hypothetical protein.
  
     0.724
BF49_3919
Hypothetical protein.
 
     0.684
BF49_0241
FIG00440108 hypothetical protein.
 
     0.674
BF49_3105
Putative Omethyl transferase.
  
     0.668
BF49_3904
Blr0101 hypothetical protein.
  
     0.666
BF49_0472
Hypothetical protein.
  
     0.651
BF49_5103
FIG00441989 hypothetical protein.
  
     0.643
BF49_2114
Bll2613 protein.
  
     0.640
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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