Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2388Miscellaneous hypotheticalpartial homology. (233 aa)    
Predicted Functional Partners:
BF49_2389
Chitinase EC 32114.
       0.779
BF49_4073
Adenylate cyclase EC 4611.
 
     0.761
BF49_5020
Hypothetical protein.
  
     0.747
BF49_4070
FIG00443189 hypothetical protein.
 
     0.743
BF49_2607
Adenylate cyclase EC 4611.
 
     0.615
BF49_0489
Adenylate cyclase EC 4611.
 
     0.557
BF49_6768
Adenylate cyclase EC 4611.
 
     0.542
BF49_2387
FIG00447151 hypothetical protein.
 
     0.538
BF49_2665
Adenylate cyclase EC 4611.
 
     0.489
BF49_3357
FIG00440904 hypothetical protein.
  
     0.486
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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