Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2406Transcriptional regulator TetR family. (196 aa)    
Predicted Functional Partners:
BF49_2405
Choline dehydrogenase EC 11991.
  
 
 0.666
BF49_2404
Porphobilinogen deaminase EC 25161; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
     
 0.573
BF49_2407
Conserved hypothetical protein.
       0.553
BF49_1033
Transcriptional regulator TetR family.
  
     0.510
BF49_2672
Transcriptional regulator TetR family.
  
     0.469
BF49_3993
Transcriptional regulator PadR family.
  
   
 0.428
BF49_0530
Transcriptional regulator TetR family.
  
     0.407
pth
PeptidyltRNA hydrolase EC 31129; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.405
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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