STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2433UDPglucose 4epimerase EC 5132. (339 aa)    
Predicted Functional Partners:
BF49_3971
UDPglucose dehydrogenase EC 11122.
 
 0.984
BF49_5289
dTDPglucose 46dehydratase EC 42146.
  
  
 
0.904
BF49_4276
UTPglucose1phosphate uridylyltransferase EC 2779.
  
 
 0.864
BF49_5293
Glycosyl transferase group 1.
  
 
 0.844
BF49_2432
Mannose1phosphate guanylyltransferase GDP EC 27722 Mannose6phosphate isomerase EC 27722; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.816
BF49_0518
Alphaalphatrehalosephosphate synthase UDPforming EC 24115.
     
  0.800
BF49_2031
Alphaalphatrehalosephosphate synthase UDPforming EC 24115.
     
  0.800
rpsL
SSU ribosomal protein S12p S23e; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 0.736
rpsN
SSU ribosomal protein S14p S29e SSU ribosomal protein S14p S29e zincindependent; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
 0.731
rpsS
SSU ribosomal protein S19p S15e; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.730
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.