Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2438Hypothetical protein. (382 aa)    
Predicted Functional Partners:
BF49_2439
Glycosyl transferase group 1 family protein.
 
   
 0.803
BF49_2441
Hypothetical protein.
  
   
 0.777
BF49_3919
Hypothetical protein.
  
     0.739
BF49_5254
Homoserine Oacetyltransferase EC 23131.
  
     0.723
BF49_2440
Hypothetical protein.
       0.682
BF49_1623
Basic prolinerich protein precursor.
  
     0.659
BF49_0472
Hypothetical protein.
  
   
 0.642
BF49_0241
FIG00440108 hypothetical protein.
  
     0.627
BF49_4070
FIG00443189 hypothetical protein.
 
   
 0.621
BF49_4189
Hypothetical protein.
    
 0.582
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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