Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2462Alginate biosynthesis protein AlgX. (211 aa)    
Predicted Functional Partners:
BF49_0886
FIG01004486 hypothetical protein.
  
 0.844
BF49_2460
Probable polybetaDmannuronate Oacetylase EC 231; Belongs to the membrane-bound acyltransferase family.
 
 
 0.844
BF49_3992
TPR repeat SEL1 subfamily.
  
 0.844
BF49_4296
FOG TPR repeat SEL1 subfamily.
  
 0.844
BF49_0471
Probable polybetaDmannuronate Oacetylase EC 231; Belongs to the membrane-bound acyltransferase family.
 
 
 0.812
BF49_5644
Probable polybetaDmannuronate Oacetylase EC 231; Belongs to the membrane-bound acyltransferase family.
 
 
 0.812
BF49_5076
Probable polybetaDmannuronate Oacetylase EC 231; Belongs to the membrane-bound acyltransferase family.
 
 
 0.811
BF49_2464
Bacteriophage N4 adsorption protein A.
 
     0.755
BF49_6497
Bsl5083 protein.
  
 0.707
BF49_6778
Exopolysacchride production negative regulator ExoR.
  
 0.707
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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