Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2488General secretion pathway protein A. (278 aa)    
Predicted Functional Partners:
BF49_2487
FIG01024239 hypothetical protein.
 
     0.812
BF49_2489
Capsular polysaccharide biosynthesisexport periplasmic protein WcbA Capsular polysaccharide export system protein KpsC.
 
     0.809
BF49_2491
TPR domain protein putative component of TonB system.
 
     0.806
BF49_2481
Eight transmembrane protein EpsH.
 
  
 0.779
BF49_2486
Tyrosineprotein kinase Wzc EC 27102.
 
     0.767
BF49_1873
InterPro IPR001395 COGs COG0656.
   
    0.697
mnmE
GTPase and tRNAU34 5formylation enzyme TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
    0.530
BF49_4794
Flagellar basalbody rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.478
BF49_5827
Flagellar basalbody rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.478
BF49_1938
Alkyl sulfatase EC 316.
   
    0.458
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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