Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2491TPR domain protein putative component of TonB system. (657 aa)    
Predicted Functional Partners:
BF49_2492
Hypothetical protein.
  
 0.921
BF49_5306
TPR repeat.
  
 0.838
BF49_2481
Eight transmembrane protein EpsH.
 
     0.817
BF49_2488
General secretion pathway protein A.
 
     0.806
BF49_2487
FIG01024239 hypothetical protein.
 
     0.801
BF49_1165
Adenylate cyclase EC 4611.
  
 0.768
BF49_3165
Adenylate cyclase EC 4611.
  
 0.768
BF49_2489
Capsular polysaccharide biosynthesisexport periplasmic protein WcbA Capsular polysaccharide export system protein KpsC.
 
   
 0.758
BF49_1559
Cytochrome c heme lyase subunit CcmF.
  
 
 0.753
BF49_2916
Adenylate cyclase EC 4611.
  
 0.752
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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