Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2517Protein gp47 recombinationrelated Bacteriophage A118. (252 aa)    
Predicted Functional Partners:
BF49_2516
Hypothetical protein.
 
     0.948
BF49_4609
Hypothetical protein.
  
     0.769
BF49_1596
Hypothetical protein.
  
     0.764
BF49_1080
Antitoxin 1.
  
     0.753
BF49_4560
Hypothetical protein.
  
     0.729
BF49_4189
Hypothetical protein.
  
     0.720
BF49_4613
FIG00440335 hypothetical protein.
  
     0.717
BF49_1594
FIG00440335 hypothetical protein.
  
     0.712
BF49_1946
FIG135464 Cytochrome c4.
  
     0.702
vapC
Toxin 1 PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.696
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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