Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2558Lsorbosone dehydrogenase. (89 aa)    
Predicted Functional Partners:
BF49_5097
Blr6566 probable dehydrogenase.
  
     0.692
BF49_2557
3oxoacylacylcarrier protein reductase EC 111100.
    
  0.620
BF49_2559
Hypothetical protein.
       0.569
BF49_1977
Lsorbosone dehydrogenase.
  
     0.454
BF49_2556
Hypothetical protein.
       0.447
BF49_6161
Hypothetical membrane protein.
 
    0.435
BF49_6387
Multimeric flavodoxin WrbA.
 
     0.434
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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