Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2582General secretion pathway protein K. (309 aa)    
Predicted Functional Partners:
BF49_0472
Hypothetical protein.
  
 
 0.857
BF49_2584
General secretion pathway protein D.
 
   
 0.815
BF49_2581
General secretion pathway protein E.
 
  
 0.782
BF49_2580
General secretion pathway protein F.
 
   
 0.760
BF49_2576
General secretion pathway protein O; Belongs to the peptidase A24 family.
 
   
 0.571
BF49_5269
Hypothetical protein.
 
     0.454
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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