Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2609Transcriptional regulator PobR AraC family. (301 aa)    
Predicted Functional Partners:
BF49_2608
Phydroxybenzoate hydroxylase EC 114132.
 
   
 0.837
BF49_4153
Phydroxybenzoate hydroxylase EC 114132.
 
   
 0.601
BF49_5314
Transcriptional regulator AraC family.
  
     0.500
BF49_3171
Glutamate synthase NADPH large chain EC 14113.
    
 0.479
BF49_1356
Transcriptional regulator AraC family.
  
     0.424
BF49_7258
Protocatechuate 34dioxygenase alpha chain EC 113113.
 
   
 0.412
BF49_2610
Protocatechuate 34dioxygenase alpha chain EC 113113.
 
   
 0.401
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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