Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2610Protocatechuate 34dioxygenase alpha chain EC 113113. (208 aa)    
Predicted Functional Partners:
BF49_2611
Protocatechuate 34dioxygenase beta chain EC 113113.
 
0.998
BF49_5982
3carboxyciscismuconate cycloisomerase EC 5512.
 
 
 0.989
BF49_2608
Phydroxybenzoate hydroxylase EC 114132.
 
  
 0.984
BF49_4153
Phydroxybenzoate hydroxylase EC 114132.
 
  
 0.984
BF49_1527
3carboxyciscismuconate cycloisomerase EC 5512.
 
 
 0.977
BF49_4053
3carboxyciscismuconate cycloisomerase EC 5512.
 
 
 0.975
BF49_7259
Protocatechuate 34dioxygenase beta chain EC 113113.
 
0.960
BF49_5980
Betaketoadipate enollactone hydrolase EC 31124.
 
  
 0.816
BF49_7260
Catechol 12dioxygenase EC 113111.
  
  
 0.662
BF49_3273
4carboxymuconolactone decarboxylase EC 41144.
 
  
 0.638
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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