Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2678Betacarotene ketolase EC 114. (341 aa)    
Predicted Functional Partners:
BF49_1280
Similar to flavohemoprotein.
  
 
 0.750
BF49_2412
Flavodoxin reductases ferredoxinNADPH reductases family 1 Vanillate Odemethylase oxidoreductase EC 11413.
  
 
 0.711
BF49_0393
FIG00450577 hypothetical protein.
   
    0.509
BF49_2267
Electron transfer flavoproteinubiquinone oxidoreductase EC 1551; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.493
BF49_6971
Hypothetical protein.
  
 
 0.474
BF49_2679
Polysaccharide biosynthesis protein.
       0.464
BF49_2788
Adenylate cyclase EC 4611.
  
 
 0.407
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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