Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_2698Amino acid ABC transporter ATPbinding protein. (243 aa)    
Predicted Functional Partners:
BF49_2699
Amino acid ABC transporter permease protein.
  
 0.995
BF49_2700
ABC transporter amino acidbinding protein.
 
  
  0.992
BF49_4327
ABC transporter permease protein.
  
 0.919
BF49_1113
Glutamate Aspartate transport system permease protein GltJ TC 3A134.
 
  
 0.897
BF49_1114
Glutamate Aspartate transport system permease protein GltK TC 3A134.
 
  
 0.897
BF49_3123
Glutamate Aspartate transport system permease protein GltK TC 3A134.
 
  
 0.897
BF49_3124
Glutamate Aspartate transport system permease protein GltJ TC 3A134.
 
  
 0.895
BF49_7066
Glutamate Aspartate transport system permease protein GltK TC 3A134.
 
  
 0.893
BF49_1779
Glutamate Aspartate transport system permease protein GltK TC 3A134.
 
  
 0.890
BF49_7067
Glutamate Aspartate transport system permease protein GltJ TC 3A134.
 
  
  0.870
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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