Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_2699Amino acid ABC transporter permease protein. (217 aa)    
Predicted Functional Partners:
BF49_2700
ABC transporter amino acidbinding protein.
 0.999
BF49_2698
Amino acid ABC transporter ATPbinding protein.
  
 0.995
BF49_4328
ABCtype polar amino acid transport system protein ATPbinding protein.
 0.956
BF49_3122
Glutamate Aspartate transport ATPbinding protein GltL TC 3A134.
 
 0.955
BF49_7065
ABC transporter ATPbinding protein.
 0.955
BF49_1115
ABCtype polar amino acid transport system ATPase component.
 
  
 0.894
BF49_4326
ABC transporter substratebinding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.882
BF49_7046
FIG00442713 hypothetical protein.
 
0.881
BF49_4329
ABCtype polar amino acid transport system protein substratebinding protein.
 
 0.879
BF49_3504
ABC transporter periplasmic amino acidbinding protein.
 
 0.866
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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