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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2708Transcriptional regulator GABAputrescine utiliation cluster 1. (182 aa)    
Predicted Functional Partners:
BF49_2707
Omegaamino acidpyruvate aminotransferase EC 26118; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.702
BF49_3428
Transcriptional regulator PhnF.
  
  
 0.640
BF49_5332
Histidine utilization repressor.
  
  
 0.640
BF49_6607
Paraaminobenzoate synthase amidotransferase component EC 26185.
 
  
 0.613
dadA
Damino acid dehydrogenase small subunit EC 14991; Oxidative deamination of D-amino acids.
 
  
 0.597
BF49_0563
Aspartokinase EC 2724; Belongs to the aspartokinase family.
 
  
 0.532
BF49_4194
Prephenate dehydratase EC 42151.
  
 
 0.523
BF49_6971
Hypothetical protein.
  
 
 0.516
BF49_1481
Transcriptional regulator GntR family.
 
  
 0.514
BF49_2697
FIG00553873 hypothetical protein.
 
  
 0.495
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.