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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2727Transcriptional regulatory protein. (319 aa)    
Predicted Functional Partners:
BF49_1356
Transcriptional regulator AraC family.
  
     0.605
BF49_5314
Transcriptional regulator AraC family.
  
     0.587
BF49_0356
Transcriptional regulator AraC family.
 
 
 0.585
BF49_2728
Hypothetical protein.
       0.547
BF49_2729
FIG111991 hypothetical protein.
       0.529
BF49_3171
Glutamate synthase NADPH large chain EC 14113.
    
 0.479
BF49_3055
Transcriptional regulator AraC family.
 
 
 0.453
BF49_2730
RNA polymerase sigma70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.441
BF49_5180
FIG00439865 hypothetical protein.
  
     0.421
BF49_2726
NADH dehydrogenase EC 16993.
       0.402
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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