Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2729FIG111991 hypothetical protein. (353 aa)    
Predicted Functional Partners:
BF49_2730
RNA polymerase sigma70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 
 0.860
BF49_2728
Hypothetical protein.
       0.746
BF49_3904
Blr0101 hypothetical protein.
  
     0.742
BF49_6222
InterPro IPR001687IPR002937 COGs COG0492.
  
     0.717
BF49_6892
FIG01265301 hypothetical protein.
  
     0.706
BF49_5501
Bll5160 protein.
  
     0.702
BF49_0994
FIG00440764 hypothetical protein.
  
     0.699
BF49_6409
FIG00443059 hypothetical protein.
  
   
 0.681
BF49_6641
Bll4915 protein.
 
     0.637
BF49_0073
FIG01005603 hypothetical protein.
  
     0.604
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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