Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2761ErfKYbiSYcfSYnhG. (191 aa)    
Predicted Functional Partners:
BF49_2762
FIG00441270 hypothetical protein.
 
     0.747
BF49_6412
DalanylDalanine carboxypeptidase EC 34164; Belongs to the peptidase S11 family.
    
 0.697
BF49_4550
ErfKYbiSYcfSYnhG.
  
     0.621
BF49_2759
Benzoylformate decarboxylase EC 4117.
       0.603
BF49_3343
DalanylDalanine carboxypeptidase EC 34164; Belongs to the peptidase S11 family.
 
  
 0.578
BF49_6987
DalanylDalanine carboxypeptidase EC 34164; Belongs to the peptidase S11 family.
    
 0.551
BF49_4398
Protein of unknown function DUF882.
 
     0.536
BF49_2760
Hypothetical protein.
       0.535
BF49_4006
Signal recognition particle GTPase.
  
     0.516
BF49_2783
Protein of unknown function DUF463 YcjXlike protein.
  
     0.491
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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