Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2762FIG00441270 hypothetical protein. (268 aa)    
Predicted Functional Partners:
BF49_6312
FIG00446684 hypothetical protein.
  
     0.751
BF49_2761
ErfKYbiSYcfSYnhG.
 
     0.747
BF49_3507
FIG01006414 hypothetical protein.
  
     0.726
BF49_0994
FIG00440764 hypothetical protein.
  
     0.716
BF49_5941
FIG00446651 hypothetical protein.
  
     0.709
BF49_4366
FIG00442141 hypothetical protein.
  
     0.701
BF49_6409
FIG00443059 hypothetical protein.
  
     0.701
BF49_3228
Transcriptional regulator TetR family.
  
     0.691
BF49_6641
Bll4915 protein.
  
     0.690
BF49_3051
FIG00444079 hypothetical protein.
  
     0.683
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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