Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2784FIG00441216 hypothetical protein. (342 aa)    
Predicted Functional Partners:
BF49_2783
Protein of unknown function DUF463 YcjXlike protein.
 
  
 0.994
BF49_4006
Signal recognition particle GTPase.
  
     0.678
BF49_3931
Murein endopeptidase.
  
     0.649
BF49_0618
FIG00450081 hypothetical protein.
  
     0.636
BF49_6099
FIG00440034 hypothetical protein.
  
     0.636
BF49_0588
Probable exported protein STY0357.
  
     0.621
BF49_6908
Invasion protein B involved in pathogenesis.
  
     0.618
BF49_6827
Putative outermembrane immunogenic protein precursor.
  
     0.597
BF49_0250
FIG000875 Thioredoxin domaincontaining protein ECYbbN.
   
    0.581
BF49_2782
COG1272 Predicted membrane protein hemolysin III homolog.
       0.579
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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