Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2805EnoylCoA hydratase EC 42117. (284 aa)    
Predicted Functional Partners:
BF49_2806
ButyrylCoA dehydrogenase EC 13992.
  
 0.881
BF49_2807
FadE30.
  
 0.863
BF49_5321
EnoylCoA hydratase EC 42117.
 
  0.805
BF49_6971
Hypothetical protein.
  
 0.797
BF49_1801
PhenylacetateCoA oxygenase PaaG subunit.
  
 
 0.756
BF49_1798
PhenylacetateCoA oxygenase PaaJ subunit.
  
 
 0.749
BF49_1799
PhenylacetateCoA oxygenase PaaI subunit.
  
 
 0.739
BF49_1800
PhenylacetateCoA oxygenase PaaH subunit.
  
 
 0.721
BF49_6296
Bll5333 protein.
 
 0.715
BF49_5345
3hydroxybutyrylCoA dehydrogenase EC 111157.
 
 0.669
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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