BF49_2813 protein (Bradyrhizobium sp.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BF49_2813

Serine protease precursor MucDAlgY associated with sigma factor RpoE. (288 aa)

Predicted Functional Partners:

BF49_2814

0.789

BF49_2812

0.773

BF49_7306

0.722

glpK

0.721

BF49_4189

0.659

BF49_2142

0.643

BF49_2811

0.582

rpsQ

0.533

BF49_7226

0.494

BF49_2686

0.491

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BF49_2142	BF49_2686	BF49_2142	BF49_2686	Twocomponent hybrid sensor and regulator.	Osuccinylbenzoic acidCoA ligase EC 62126.	0.898
BF49_2142	BF49_2813	BF49_2142	BF49_2813	Twocomponent hybrid sensor and regulator.	Serine protease precursor MucDAlgY associated with sigma factor RpoE.	0.643
BF49_2142	BF49_2814	BF49_2142	BF49_2814	Twocomponent hybrid sensor and regulator.	Transcriptional regulatory protein.	0.881
BF49_2142	BF49_4189	BF49_2142	BF49_4189	Twocomponent hybrid sensor and regulator.	Hypothetical protein.	0.412
BF49_2142	BF49_7306	BF49_2142	BF49_7306	Twocomponent hybrid sensor and regulator.	HtrA proteasechaperone protein.	0.643
BF49_2142	glpK	BF49_2142	BF49_4180	Twocomponent hybrid sensor and regulator.	Glycerol kinase EC 27130; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.	0.464
BF49_2686	BF49_2142	BF49_2686	BF49_2142	Osuccinylbenzoic acidCoA ligase EC 62126.	Twocomponent hybrid sensor and regulator.	0.898
BF49_2686	BF49_2813	BF49_2686	BF49_2813	Osuccinylbenzoic acidCoA ligase EC 62126.	Serine protease precursor MucDAlgY associated with sigma factor RpoE.	0.491
BF49_2686	BF49_4189	BF49_2686	BF49_4189	Osuccinylbenzoic acidCoA ligase EC 62126.	Hypothetical protein.	0.660
BF49_2686	BF49_7226	BF49_2686	BF49_7226	Osuccinylbenzoic acidCoA ligase EC 62126.	FIG00440594 hypothetical protein.	0.611
BF49_2686	BF49_7306	BF49_2686	BF49_7306	Osuccinylbenzoic acidCoA ligase EC 62126.	HtrA proteasechaperone protein.	0.491
BF49_2686	glpK	BF49_2686	BF49_4180	Osuccinylbenzoic acidCoA ligase EC 62126.	Glycerol kinase EC 27130; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.	0.446
BF49_2686	rpsQ	BF49_2686	BF49_6239	Osuccinylbenzoic acidCoA ligase EC 62126.	SSU ribosomal protein S17p S11e; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.781
BF49_2811	BF49_2812	BF49_2811	BF49_2812	Glyoxalase family protein.	Hypothetical protein.	0.572
BF49_2811	BF49_2813	BF49_2811	BF49_2813	Glyoxalase family protein.	Serine protease precursor MucDAlgY associated with sigma factor RpoE.	0.582
BF49_2811	BF49_2814	BF49_2811	BF49_2814	Glyoxalase family protein.	Transcriptional regulatory protein.	0.654
BF49_2812	BF49_2811	BF49_2812	BF49_2811	Hypothetical protein.	Glyoxalase family protein.	0.572
BF49_2812	BF49_2813	BF49_2812	BF49_2813	Hypothetical protein.	Serine protease precursor MucDAlgY associated with sigma factor RpoE.	0.773
BF49_2812	BF49_2814	BF49_2812	BF49_2814	Hypothetical protein.	Transcriptional regulatory protein.	0.773
BF49_2813	BF49_2142	BF49_2813	BF49_2142	Serine protease precursor MucDAlgY associated with sigma factor RpoE.	Twocomponent hybrid sensor and regulator.	0.643