Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_2831Hydantoin racemase EC 5199. (227 aa)    
Predicted Functional Partners:
BF49_1413
Hydantoin racemase EC 5199.
  
     0.771
BF49_2832
Methylaccepting chemotaxis protein.
       0.757
BF49_1337
Dhydantoinase EC 3522.
 
   
 0.601
BF49_2830
Biotin carboxylase EC 63414.
 
     0.570
BF49_4325
NcarbamoylDamino acid hydrolase EC 35177 putative.
 
   
 0.568
BF49_1412
Dhydantoinase EC 3522.
 
   
 0.564
BF49_3142
Dihydropyrimidinase EC 3522.
 
   
 0.540
BF49_4075
Dipeptidebinding ABC transporter periplasmic substratebinding component TC 3A152.
 
     0.471
BF49_2833
Hypothetical protein.
       0.447
BF49_4854
Oligopeptide ABC transporter periplasmic oligopeptidebinding protein OppA TC 3A151.
 
     0.424
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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