Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_2853FIG00442794 hypothetical protein. (310 aa)    
Predicted Functional Partners:
BF49_4287
Flagellar motor rotation protein MotB.
  
 0.685
tolB
Tol-Pal system protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.634
BF49_3911
Possible outer membrane protein.
   
 0.627
BF49_2592
Capsular polysaccharide biosynthesisexport periplasmic protein WcbA Capsular polysaccharide export system protein KpsC.
   
 0.622
BF49_6501
Possible outer membrane protein possible porin precursor; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
   
 0.620
BF49_6574
Possible outer membrane protein possible porin precursor; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
   
 0.620
BF49_1249
Flagellar motor rotation protein MotB.
   
 0.619
BF49_4811
Flagellar motor rotation protein MotB.
   
 0.619
BF49_2489
Capsular polysaccharide biosynthesisexport periplasmic protein WcbA Capsular polysaccharide export system protein KpsC.
   
 0.617
BF49_7318
Capsular polysaccharide biosynthesisexport periplasmic protein WcbA Capsular polysaccharide export system protein KpsC.
   
 0.617
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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