BF49_2864 protein (Bradyrhizobium sp.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BF49_2864

Bll7352 protein. (132 aa)

Predicted Functional Partners:

BF49_2865

0.739

BF49_6867

0.556

BF49_6759

0.514

BF49_2866

0.472

pdhA

0.457

BF49_6151

0.440

BF49_0410

0.434

BF49_1287

0.434

BF49_1914

0.434

BF49_6764

0.434

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BF49_0410	BF49_2864	BF49_0410	BF49_2864	Dihydrolipoamide dehydrogenase of 2oxoglutarate dehydrogenase EC 1814.	Bll7352 protein.	0.434
BF49_0410	BF49_6759	BF49_0410	BF49_6759	Dihydrolipoamide dehydrogenase of 2oxoglutarate dehydrogenase EC 1814.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.999
BF49_0410	BF49_6764	BF49_0410	BF49_6764	Dihydrolipoamide dehydrogenase of 2oxoglutarate dehydrogenase EC 1814.	Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex EC 1814.	0.969
BF49_0410	pdhA	BF49_0410	BF49_6758	Dihydrolipoamide dehydrogenase of 2oxoglutarate dehydrogenase EC 1814.	Pyruvate dehydrogenase E1 component alpha subunit EC 1241; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	0.998
BF49_1287	BF49_1914	BF49_1287	BF49_1914	Glutathione reductase EC 1817; Maintains high levels of reduced glutathione.	Similar to glutathione reductase.	0.921
BF49_1287	BF49_2864	BF49_1287	BF49_2864	Glutathione reductase EC 1817; Maintains high levels of reduced glutathione.	Bll7352 protein.	0.434
BF49_1287	BF49_6759	BF49_1287	BF49_6759	Glutathione reductase EC 1817; Maintains high levels of reduced glutathione.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.995
BF49_1287	pdhA	BF49_1287	BF49_6758	Glutathione reductase EC 1817; Maintains high levels of reduced glutathione.	Pyruvate dehydrogenase E1 component alpha subunit EC 1241; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	0.903
BF49_1914	BF49_1287	BF49_1914	BF49_1287	Similar to glutathione reductase.	Glutathione reductase EC 1817; Maintains high levels of reduced glutathione.	0.921
BF49_1914	BF49_2864	BF49_1914	BF49_2864	Similar to glutathione reductase.	Bll7352 protein.	0.434
BF49_1914	BF49_6759	BF49_1914	BF49_6759	Similar to glutathione reductase.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.995
BF49_1914	pdhA	BF49_1914	BF49_6758	Similar to glutathione reductase.	Pyruvate dehydrogenase E1 component alpha subunit EC 1241; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	0.899
BF49_2864	BF49_0410	BF49_2864	BF49_0410	Bll7352 protein.	Dihydrolipoamide dehydrogenase of 2oxoglutarate dehydrogenase EC 1814.	0.434
BF49_2864	BF49_1287	BF49_2864	BF49_1287	Bll7352 protein.	Glutathione reductase EC 1817; Maintains high levels of reduced glutathione.	0.434
BF49_2864	BF49_1914	BF49_2864	BF49_1914	Bll7352 protein.	Similar to glutathione reductase.	0.434
BF49_2864	BF49_2865	BF49_2864	BF49_2865	Bll7352 protein.	Bll2821 protein.	0.739
BF49_2864	BF49_2866	BF49_2864	BF49_2866	Bll7352 protein.	Hypothetical protein.	0.472
BF49_2864	BF49_6151	BF49_2864	BF49_6151	Bll7352 protein.	FIG00441968 hypothetical protein.	0.440
BF49_2864	BF49_6759	BF49_2864	BF49_6759	Bll7352 protein.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.514
BF49_2864	BF49_6764	BF49_2864	BF49_6764	Bll7352 protein.	Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex EC 1814.	0.434